PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0062s0037.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HB-other
Protein Properties Length: 412aa    MW: 44356.9 Da    PI: 8.8075
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0062s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.14.7e-0632752356
                          SS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
              Homeobox 23 rypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                           +p ++  eeLA k            ++ +qV +WFqNrR  +k
  Sphfalx0062s0037.1.p 32 ATPARTIVEELAIKFsnsperagqkPVQSKQVWNWFQNRRHAQK 75
                          5778888888888888888888888899************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-61383IPR009057Homeodomain-like
PROSITE profilePS500718.61377IPR001356Homeobox domain
SuperFamilySSF466898.13E-73178IPR009057Homeodomain-like
PfamPF167196.2E-39126253IPR032001SAWADEE domain
Gene3DG3DSA:2.40.50.402.1E-4134178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGRTPVGGGP AFRFIPSEVA DMEKALDASK GATPARTIVE ELAIKFSNSP ERAGQKPVQS  60
KQVWNWFQNR RHAQKAKSAK TPEKHKAIAT GSEPPSSVKV LAPAPAPAPA PASSPVVVRK  120
LSEPKQLDFE AKSARDEAWY DVATFISKRT GENGEPEVRV RFAGFGSEED EWVSVKNSVR  180
QRSLPCETTE CVAVLPGDLI LCFQEGNEQA LYFDADILDV QRRRHDVRGC RCRFWVRYRH  240
DQTEEVVPLR KVCRRPETES RLQQAHEAAA LASKNSSKIH KAVPEATGKV QSISTPTNSG  300
KALGPPPVFP SKGTSAPMLN PNAELSSTGN LGAPALDLQG AKEANSLAVE HSSAGKSTAQ  360
ALDLPDQSKV ITSTLQHPGS EAVFTSASTS TTVVLNLRPS GHVDIETPIH T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-481272574134SHH1 SAWADEE
4iur_B2e-481272574134SHH1 SAWADEE
4iut_A2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-481272574134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001760710.11e-137predicted protein, partial
SwissprotQ8RWJ71e-115SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLF6H1Z41e-118F6H1Z4_VITVI; Putative uncharacterized protein
STRINGVIT_19s0014g01880.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-94sequence-specific DNA binding transcription factors;sequence-specific DNA binding